Web Sites for Genomic Sequence Analysis
Compiled 1996 - 2007 for MB(GN) 758 by Eric S. Miller
Submit web sites recommended for addition to eric_miller@ncsu.edu
NCBI: National Center forBiotechnology Information
Sequence Submission to GenBank
Genome Databases
The Institute for Genomic Research (TIGR)
Washington University Human Genome Site
Colibri: E.coli at the Pasteur (links to Mycob., Helicobacter, etc.)
VISTA: Comparative Genome Analysis
National Center for Genome Resources
Human Genome Database @ Johns Hopkins
Mycoplasma pneumoniae Database
Databases & Protocols in Genomics / Washington Univ. Genome Center
Comprehensive Resources& Tools
Great Online Analysis Resource Site
EMBL - European Biotechnology Institute
Pedros BioMolecular Software Tools
The IUBio Molecular Biology Archive (SeqPup, SeqApp, etc.)
DNA Sequence Analysis Sites
WebCutter Restriction Site Analysis
Online Primer Selection Program
SeqPup - Macintosh Sequence Analysis Software
REBASE Restriction Enzyme Site
GeneFinder and other Baylor resources
GeneMark Home Page (Gene Finding)
LOGO: Information Theory, Walker Program and Molecular Recognition
RNA Analysis & Databases
Zuker's mFOLD RNA Folding Web Site
Ribosomal RNA Database Project: alignments, tree building, etc.
TransTermHP - Termination Sites Program to download
TransTerm - mRNA analysis online
The RNA Society of North Carolina
Proteins: Sequence & StructureAnalysis
NCBI Protein Sequence Database
NCBI Molecular Modeling Database
Baylor Protein Sequence / Pattern Searches
Predator: Protein Structure Prediction
Predict Protein (ESPript postscript printing)
ModBase: Comparative Protein Models
Dali Protein Structure Comparison
3D viewing, analysis software (Kinemage, etc.)
Multiple Sequence Alignment &Phylogeny
University of Washington - PHYLIP
VSNS Multiple Alignment Resource
CSH Bioservers Resource, Alignments, etc.
TreeView tree drawing software
NCSU Computational Molecular Evolution (GN556/ST556) Course
Metabolic Pathways and Reconstructions
Kegg: Genes, Genomes and pathways
E. coli Metabolism and Pathways
Strain Collections,Funding Agencies and Miscellaneous Sites
American Type Culture Collection
World Data Centre for Microorganisms
Michigan State University Microbial Ecology Center
American Society of Microbiology (ASM)
Periodic Table of the Elements
GCG Wisconsin Package: Online Help, Utilities& UNIX
GCG & SeqWeb at NCSU was inactivated in 2006; the NC BioPortal may host it
Genetics Computer Group - the Company
Companies
For Reagents and Resources
MI/X , a free Xwindows emulator for GCG SeqLab
PowerLan (eXodus) XWindows Software
Ghostscript, a Postscript Viewer
Visit the NC StateDepartment of Microbiology Home Page
| This site maintained by Eric Miller |
Last Modified: January 2007